Get Path to bcftools Binary Directory

Returns the path to the directory containing bcftools and related scripts.

Usage

bcftools_bin_dir()

Value

A character string containing the path to the bcftools bin directory.

Details

The directory contains the following tools:

• bcftools - Main bcftools executable

• color-chrs.pl - Chromosome coloring script

• gff2gff - GFF conversion tool

• gff2gff.py - GFF conversion Python script

• guess-ploidy.py - Ploidy guessing script

• plot-roh.py - ROH plotting script

• plot-vcfstats - VCF statistics plotting script

• roh-viz - ROH visualization tool

• run-roh.pl - ROH analysis script

• vcfutils.pl - VCF utilities script

• vrfs-variances - Variant frequency variances tool

Examples

bcftools_bin_dir()
#> [1] "/home/runner/work/_temp/Library/RBCFTools/bcftools/bin"