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Get Linker Flags for htslib

Source: R/paths.R
htslib_libs.Rd

Returns the linker flags needed to link against htslib.

Usage

htslib_libs(static = FALSE)

Arguments

static

Logical. If TRUE, returns flags for static linking. If FALSE (default), returns flags for dynamic linking.

Value

A character string containing linker flags including -L library path and -l library names.

Details

For dynamic linking, returns -L<libdir> -lhts. For static linking, also includes the dependent libraries: -lpthread -lz -lm -lbz2 -llzma -ldeflate.

Examples

htslib_libs()
#> [1] "-L/home/runner/work/_temp/Library/RBCFTools/htslib/lib -lhts"
htslib_libs(static = TRUE)
#> [1] "-L/home/runner/work/_temp/Library/RBCFTools/htslib/lib -lhts -lpthread -lz -lm -lbz2 -llzma -ldeflate -ldl"
# Use in Makevars: PKG_LIBS = $(shell Rscript -e "cat(RBCFTools::htslib_libs())")