Get All Linking Information for RBCFTools — linking

Returns a list with all paths and flags needed for linking against htslib and bcftools from this package.

Usage

linking_info()

Value

A named list with the following elements:

htslib_include: Path to htslib include directory
htslib_lib: Path to htslib library directory
bcftools_lib: Path to bcftools library directory
cflags: Compiler flags for htslib
htslib_libs: Linker flags for htslib (dynamic)
htslib_libs_static: Linker flags for htslib (static)
bcftools_libs: Linker flags for bcftools
all_libs: Combined linker flags for both bcftools and htslib

Examples

info <- linking_info()
info$cflags
#> [1] "-I/home/runner/work/_temp/Library/RBCFTools/htslib/include"
info$all_libs
#> [1] "-L/home/runner/work/_temp/Library/RBCFTools/bcftools/lib -lbcftools -L/home/runner/work/_temp/Library/RBCFTools/htslib/lib -lhts"