Print Makevars Configuration for LinkingTo — print_makevars

Prints example Makevars configuration that can be used by packages that want to link against htslib and/or bcftools via LinkingTo.

Usage

print_makevars_config(use_bcftools = FALSE, static = FALSE)

Arguments

use_bcftools: Logical. If TRUE, includes bcftools library flags. Default is FALSE (htslib only).
static: Logical. If TRUE, uses static linking flags. Default is FALSE.

Value

Invisibly returns the Makevars text as a character string.

Examples

# Print Makevars for htslib only
print_makevars_config()
#> # Add to your package's src/Makevars or src/Makevars.in
#> # Generated by RBCFTools::print_makevars_config()
#> 
#> PKG_CPPFLAGS = -I/home/runner/work/_temp/Library/RBCFTools/htslib/include
#> PKG_LIBS = -L/home/runner/work/_temp/Library/RBCFTools/htslib/lib -lhts -Wl,--disable-new-dtags -Wl,-rpath,'$$ORIGIN/../htslib/lib'

# Print Makevars for both bcftools and htslib
print_makevars_config(use_bcftools = TRUE)
#> # Add to your package's src/Makevars or src/Makevars.in
#> # Generated by RBCFTools::print_makevars_config()
#> 
#> PKG_CPPFLAGS = -I/home/runner/work/_temp/Library/RBCFTools/htslib/include
#> PKG_LIBS = -L/home/runner/work/_temp/Library/RBCFTools/bcftools/lib -lbcftools -L/home/runner/work/_temp/Library/RBCFTools/htslib/lib -lhts -Wl,--disable-new-dtags -Wl,-rpath,'$$ORIGIN/../bcftools/lib' -Wl,-rpath,'$$ORIGIN/../htslib/lib'