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Read VCF/BCF file into a data frame or list of batches

Source: R/vcf_arrow.R
vcf_to_arrow.Rd

Convenience function to read an entire VCF file into memory as an R data structure.

Usage

vcf_to_arrow(filename, as = c("tibble", "data.frame", "batches"), ...)

Arguments

filename

Path to VCF or BCF file

as

Character string specifying output format: "tibble", "data.frame", or "batches" (list of nanoarrow arrays)

...

Additional arguments passed to vcf_open_arrow

Value

Depends on as parameter:

  • "tibble": A tibble

  • "data.frame": A data.frame

  • "batches": A list of nanoarrow_array objects