Predict X-CNV MVP scores

Annotate CNVs and compute the X-CNV MVP score. With an upstream model this evaluates a staged xcnv-tree-v1 artifact in ordinary R. Installing and running the package does not require XGBoost.

Usage

predict_cnv(
  x,
  resources,
  model = NULL,
  overlap_backend = c("duckdb", "reference")
)

Arguments

x

A path, data frame, or matrix containing CNV records.

resources

An xcnv_resources object or an explicit resource directory.

model

A model object/path. If NULL, a model in resources is used when present, otherwise the bundled published model is used.

overlap_backend

Passed to annotate_cnv().

Value

A data frame containing the legacy annotation columns, a final MVP_score model column, and contract columns for provider, assembly, resource release, model identity, policy identity, and status.