Import caller-supplied Monarch relations — ducksemantics_monarch_import • ducksemantics

This function never downloads Monarch data. A typed release catalog is required to prove that every fact has a known provider/release identity.

Usage

ducksemantics_monarch_import(
  facts,
  releases,
  relation = c("gene_phenotype", "gene_disease", "disease_phenotype"),
  conn = NULL,
  table = NULL,
  replace = FALSE
)

Arguments

facts: Gene-phenotype, gene-disease, or disease-phenotype data frame, or a caller-owned DuckDB table name with conn.
releases: Typed catalog from ducksemantics_monarch_release_catalog().
relation: One of "gene_phenotype", "gene_disease", or "disease_phenotype".
conn: Optional DBI connection.
table: Optional destination table when conn is supplied.
replace: Replace destination rows.

Value

Normalized Monarch relation.