Select one cataloged Monarch release — ducksemantics_monarch_query • ducksemantics

Select one cataloged Monarch release

Usage

ducksemantics_monarch_query(
  facts,
  releases,
  relation = c("gene_phenotype", "gene_disease", "disease_phenotype"),
  provider_id,
  release_id = NULL,
  as_of = NULL,
  as_of_ordinal = NULL,
  conn = NULL
)

Arguments

facts: Monarch fact relation or a caller-owned DuckDB table name.
releases: Typed Monarch release catalog.
relation: Relation type.
provider_id: Provider identity to bind.
release_id: Exact catalog release identity.
as_of: Typed Date or POSIXct cutoff.
as_of_ordinal: Numeric source-order cutoff.
conn: Optional DBI connection for table relations.

Value

Facts from one selected provider/release. Selection metadata is held in release_selected and provider_selected attributes.