Enable native ClinVar and PubMed XML scanning on a DuckDB connection

Loads the package-owned rclinvarbitration extension. Its native clinvar_xml_entities(path) and rclinvarbitration_pubmed_xml_rows(path) table functions are concrete one-pass staging surfaces for rclinvarbitration_import_xml() and rclinvarbitration_import_pubmed(). rclinvar_json_field() remains the compact ClinVar field scalar. The connection must have been created with duckdb::duckdb(config = list(allow_unsigned_extensions = "true")), as for any locally built DuckDB extension.

Usage

rclinvarbitration_enable(con, extension_path = NULL)

Arguments

con

A DuckDB DBI connection.

extension_path

Optional explicit exact-version extension path.

Value

con, invisibly.