Package index

Connection, download, and import

rclinvarbitration_download_clinvar()

Download official ClinVar source files

rclinvarbitration_extension_path()

Locate a version-matched RClinVarbitration DuckDB extension

rclinvarbitration_enable()

Enable native ClinVar and PubMed XML scanning on a DuckDB connection

rclinvarbitration_init()

Initialize the ClinVar relational schema

rclinvarbitration_import_flat()

Import the official ClinVar flat reports as one tidy table

rclinvarbitration_import_xml()

Stream a ClinVar VCV XML release into one relational DuckDB table

rclinvarbitration_import_pubmed()

Import a PubMed baseline or update XML source

Parquet outputs

rclinvarbitration_export_clinvarbitration_parquet()

Export ClinVarbitration decisions to Parquet

rclinvarbitration_reproduce_clinvarbitration_parquet()

Reproduce ClinVarbitration decisions from archived ClinVar flat files

rclinvarbitration_publish_ducklake()

Publish a tidy ClinVar evidence export to DuckLake

Schema and policy

rclinvarbitration_schema_sql()

ClinVar relational schema SQL

rclinvarbitration_policy_version()

Current ClinVarbitration policy version

rclinvarbitration_policy_sql()

ClinVarbitration policy SQL

rclinvarbitration_disease_release_transitions()

Compare fixed-policy disease decisions between two ClinVar releases