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Changelog

Source: NEWS.md

Rdragmap 0.0.0.9000

  • Add write_uncompressed index generation and a validated end-to-end mmap_reference workflow, with an explicit disk-space tradeoff and a clear error when required uncompressed tables are absent.

  • Unmap each memory-mapped index file using its validated extent, preventing a teardown crash exposed by the package’s small real mmap workflow.

  • Create static archives with portable ar options accepted by GNU and Darwin toolchains.

  • Use a pthread mutex-and-condition counter for the hash compressor on Darwin instead of deprecated unnamed POSIX semaphores.

  • Stop forcing the POSIX limits header into every imported C source because its Darwin NZERO macro conflicts with the hash generator under -Werror.

  • Probe GCC-only C tuning and warning flags separately from C++ tuning flags so Apple Clang can compile imported hash-generation sources under -Werror.

  • Use the portable POSIX limits header for imported metrics compilation on macOS.

  • Fix Apple Clang compilation for imported alignment extent and iterator initialization.

  • Build against the R-universe macOS Boost bundle and use POSIX and Darwin facilities where the imported Linux implementation was not portable.

  • Add a source-built R wrapper that owns and resolves dragen-os without searching PATH.

  • Add typed S7 results, operational error values, and contract conditions for reference generation and FASTQ to SAM alignment.

  • Add a reproducible native source archive, configure-time build, tinytest coverage, and tarball-based package Makefile workflow.