Package index
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mb_align_n()mb_align_read_n()mb_align_col()mb_align_read_col()mb_align_cigar_words() - Inspect native minibwa alignment batches
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mb_fastx_iter()mb_fastx_next()mb_fastx_n()mb_map_fastx_batch() - Iterate FASTA/FASTQ batches without R sequence materialization
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mb_index_build() - Build a minibwa index with the native library
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mb_index_contigs() - Return minibwa index contigs
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mb_index_load() - Load a native minibwa index
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mb_map() - Map raw sequence bytes with native minibwa
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mb_map_batch() - Map a batch of query sequences with native minibwa
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mb_map_pair_batch() - Map paired query sequence batches with native minibwa
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mb_opts() - Native minibwa options
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mb_query_stream()mb_query_stream_next()mb_query_stream_cancel()mb_query_stream_error()mb_query_group_n_reads()mb_query_group_n_records()mb_query_group_name()mb_query_group_input_order() - Open a lossless native FASTQ query-group stream
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minibwa_available() - Test whether the minibwa CLI is available
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minibwa_cli() - Run the minibwa CLI
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minibwa_index() - Build a minibwa index through the CLI
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minibwa_map() - Map reads through the minibwa CLI
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minibwa_path() - Locate the packaged minibwa executable
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minibwa_upstream_info() - Report the pinned upstream minibwa source
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minibwa_version() - Report the minibwa CLI version
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rminibwa_htslib_info() - Inspect the htslib Supplied by Rduckhts
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simd_backend() - Report the selected SIMD backend
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simd_info() - Report SIMD dispatch diagnostics
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simd_set_backend() - Select the runtime SIMD backend