Builds a TBI or CSI index for a VCF/BCF file using the DuckHTS extension.
Usage
rduckhts_bcf_index(con, path, index_path = NULL, min_shift = NULL, threads = 4)
Arguments
- con
A DuckDB connection with DuckHTS loaded
- path
Path to the input VCF/BCF file
- index_path
Optional explicit output path for the created index
- min_shift
Optional explicit min_shift passed to htslib
- threads
htslib indexing thread count
Value
A data frame with `success`, `index_path`, and `index_format`