Package index • Rduckhts

All functions

detect_complex_types(): Detect Complex Types in DuckDB Table
duckdb_type_mappings(): DuckDB to R Type Mappings
duckhts_bootstrap(): Bootstrap the duckhts extension sources into the R package
duckhts_build(): Build the duckhts DuckDB extension
duckhts_load(): Load the duckhts extension into a DuckDB connection
extract_array_element(): Extract Array Elements Safely
extract_map_data(): Extract MAP Keys and Values
normalize_tabix_types(): Normalize R Data Types to DuckDB Types for Tabix
rduckhts_bam(): Create SAM/BAM/CRAM Table
rduckhts_bam_index(): Build BAM or CRAM Index
rduckhts_bcf(): Create VCF/BCF Table
rduckhts_bcf_index(): Build VCF or BCF Index
rduckhts_bed(): Create BED Table
rduckhts_bgunzip(): BGZF Decompress a File
rduckhts_bgzip(): BGZF Compress a File
rduckhts_detect_quality_encoding(): Detect FASTQ Quality Encoding
rduckhts_fasta(): Create FASTA Table
rduckhts_fasta_index(): Build FASTA Index
rduckhts_fasta_nuc(): Compute FASTA Interval Nucleotide Composition
rduckhts_fastq(): Create FASTQ Table
rduckhts_functions(): List DuckHTS Extension Functions
rduckhts_gff(): Create GFF3 Table
rduckhts_gtf(): Create GTF Table
rduckhts_hts_header(): Read HTS Header Metadata
rduckhts_hts_index(): Read HTS Index Metadata
rduckhts_hts_index_raw(): Read Raw HTS Index Blob
rduckhts_hts_index_spans(): Read HTS Index Spans
rduckhts_liftover(): Lift Over Variant Coordinates Against a Query
rduckhts_load(): Load DuckHTS Extension
rduckhts_munge(): Munge Summary Statistics Rows
rduckhts_score(): Compute Polygenic Scores
rduckhts_tabix(): Create Tabix-Indexed File Table
rduckhts_tabix_index(): Build Tabix Index
setup_hts_env(): Setup HTSlib Environment