Creates a DuckDB table from any tabix-indexed file using the DuckHTS extension.
Usage
rduckhts_tabix(
con,
table_name,
path,
region = NULL,
index_path = NULL,
header = NULL,
header_names = NULL,
auto_detect = NULL,
column_types = NULL,
overwrite = FALSE
)Arguments
- con
A DuckDB connection with DuckHTS loaded
- table_name
Name for the created table
- path
Path to the tabix-indexed file
- region
Optional genomic region (e.g., "chr1:1000-2000")
- index_path
Optional explicit path to index file (.tbi/.csi)
- header
Logical. If TRUE, use first non-meta line as column names
- header_names
Character vector to override column names
- auto_detect
Logical. If TRUE, infer basic numeric column types
- column_types
Character vector of column types (e.g. "BIGINT", "VARCHAR")
- overwrite
Logical. If TRUE, overwrites existing table