Compresses a plain file to BGZF using the DuckHTS extension.
Usage
rduckhts_bgzip(
con,
path,
output_path = NULL,
threads = 4,
level = -1,
keep = TRUE,
overwrite = FALSE
)
Arguments
- con
A DuckDB connection with DuckHTS loaded
- path
Path to the input file
- output_path
Optional explicit output path
- threads
BGZF worker thread count
- level
Compression level, or -1 for the htslib default
- keep
Keep the original input file after compression
- overwrite
Overwrite an existing output file
Value
A data frame describing the created BGZF file