Computes bedtools nuc-style nucleotide composition over either a BED file or generated fixed-width bins.
Usage
rduckhts_fasta_nuc(
con,
path,
bed_path = NULL,
bin_width = NULL,
region = NULL,
index_path = NULL,
bed_index_path = NULL,
include_seq = FALSE
)Arguments
- con
A DuckDB connection with DuckHTS loaded
- path
Path to the FASTA file
- bed_path
Optional BED path. Supply exactly one of `bed_path` or `bin_width`.
- bin_width
Optional fixed bin width in base pairs
- region
Optional FASTA region filter
- index_path
Optional explicit FASTA index path
- bed_index_path
Optional explicit BED tabix index path
- include_seq
Include the fetched interval sequence