Combine BND identity with endpoint genes

`pairs_table` holds the result of [rduckvep_prepare_breakend_pairs()] and `genes_table` has `event_index` and `gene_id`, one row per gene overlapped by that physical endpoint. Each source record keeps its own row and gene list. `candidate_partner_genes` records partner-gene evidence only: the result never asserts a fusion, frame or phase.

Usage

rduckvep_prepare_breakend_fusion(con, pairs_table, genes_table, ...)

Arguments

con

A connection with DuckVEP loaded.

pairs_table

Name of a relation with the identity builder columns.

genes_table

Name of an `event_index`, `gene_id` relation.

...

Named options for the native builder.

Value

A data frame with one row per physical source record.