Package index • Rduckvep

All functions

rduckvep_annotate(): Annotate events using a loaded DuckVEP model
rduckvep_annotate_sql() rduckvep_transcript_projection_sql() rduckvep_lof_sql() rduckvep_ensembl_regions_sql() rduckvep_ensembl_transcripts_sql() rduckvep_ensembl_regulation_features_sql() rduckvep_model_receipt_sql(): Generate DuckVEP SQL on the caller's connection
rduckvep_coding_calls(): Read the Coding Calls of a VCF or BCF File
rduckvep_coding_transcripts(): Find the Transcripts Whose Coding Sequence Events Overlap
rduckvep_connect(): Open DuckDB with DuckVEP loaded
rduckvep_haplotypes(): Replay Phased Transcript Haplotypes
rduckvep_load(): Load the bundled DuckVEP extension
rduckvep_load_model(): Load a resident transcript model, on either DuckDB C API host
rduckvep_prepare_breakend_fusion(): Combine BND identity with endpoint genes
rduckvep_prepare_breakend_pairs(): Validate BND mate and event identity
rduckvep_prepare_expansionhunter(): Prepare ExpansionHunter v5 repeat alleles
rduckvep_prepare_structural_hgvs(): Prepare structural HGVS descriptions
rduckvep_prepare_sv_geometry(): Prepare VCF structural geometry and insertion provenance
rduckvep_save_model() rduckvep_restore_model(): Save and restore a resident model as a snapshot file