Package index • RGlimpse2

Executable discovery and dispatch

rglimpse2_executables(): Resolve packaged or explicitly supplied GLIMPSE2 executables
rglimpse2_simd_info(): Inspect and resolve packaged GLIMPSE2 phase SIMD executables
RGlimpse2Executables(): Explicit GLIMPSE2 child executables
RGlimpse2SimdInfo(): RGlimpse2 phasing-executable dispatch information

rglimpse2_genetic_maps() rglimpse2_genetic_map(): Resolve packaged GRCh37 or GRCh38 genetic maps

rglimpse2_chunk(): Create deterministic GLIMPSE2 imputation chunks
rglimpse2_split_reference(): Build one GLIMPSE2 binary reference chunk
rglimpse2_phase(): Phase and impute one GLIMPSE2 chunk from genotype likelihoods
rglimpse2_phase_bam(): Phase and impute one GLIMPSE2 chunk directly from one BAM or CRAM
rglimpse2_phase_bams(): Phase and impute one GLIMPSE2 chunk directly from several BAMs or CRAMs
rglimpse2_ligate(): Ligate ordered GLIMPSE2 chunk outputs

RGlimpse2RunResult(): A completed RGlimpse2 child-process operation
RGlimpse2ErrorValue() RGlimpse2InputErrorValue() RGlimpse2OutputErrorValue() RGlimpse2ProcessErrorValue(): A typed RGlimpse2 operational error value
rglimpse2_error_value(): Construct a typed RGlimpse2 operational error
rglimpse2_is_error(): Test whether a value is an RGlimpse2 operational error
rglimpse2_contract_violation(): Construct a typed RGlimpse2 contract condition