Documentation

Reference, contracts and evidence for DuckVEP, built from revision f4b1fd2796. The R package reference is published separately.

Reference

• SQL function reference
• Compatibility and errata
• DuckDB hosts and release profile

Contracts

• Design and implementation contract
• The duckvep-coding haplotype contract
• Breakend identity, fusion evidence and structural HGVS
• Corpus workflow
• MANE v1.5 mapped to GRCh37

Evidence

• Conformance against Ensembl VEP
• Haplotypes
• Haplotypes with indels
• Haplotype scale qualification
• Transcript projection

Performance

• Throughput
• Throughput methods and receipts
• DuckVEP and vep-rs
• Scale runner